Print(paste("Rpart's best CP: ", cp.best.rpart)) 0001))ĭt.caret <- train(form = f, data =, method = "rpart", metric = "Accuracy", trControl = train.ctrl, tuneGrid = tGrid) Note that ksvm function does not have a weight parameter, so those models won't be enabled. 1 Answer Sorted by: 6 The rpart packages plotcp function plots the Complexity Parameter Table for an rpart tree fit on the training dataset. Using the simulated data as a training set, a CART regression tree can be trained using the caret::train() function with method 'rpart'.Behind the scenes, the caret::train() function calls the rpart::rpart() function to perform the learning process. Note that ksvm function does not have a weight parameter, so those models wont be enabled. Train.ctrl <- trainControl(method = "cv", number = 10) Right now, it should work for rpart variants, glmnet, gamSpline, glmboost, gamboost, evtree, ctree, ctree2, chaid, cforest, blackboost, treebag, glm, glmStepAIC, and bayesglm. Right now, it should work for rpart variants, glmnet, gamSpline, glmboost, gamboost, evtree, ctree, ctree2, chaid, cforest, blackboost, treebag, glm, glmStepAIC, and bayesglm. 01)į <- as.formula(paste0("TERM_FLAG ~ ", paste0(names(), collapse = "+")))ĭt <- rpart(formula = f, data =, control = rpart.ctrl, parms = list(split = "gini"))Ĭp.best.rpart <- dt$cptable), "CP"] Apparently caret has little to do with our orange friend, the carrot. Rpart.ctrl <- ntrol(minsplit = 5, minbucket = 5, cp =. Dallas, Texas, United States Implemented end-to-end systems for Data Analytics, Data Automation and integrated with custom visualization tools using R, Mahout, Hadoop and MongoDB. Caret stands for C lassification A nd Re gression T raining. 8, list = FALSE)ĭ <- data.classĭ <- data.class Train.indices <- createDataPartition(data.class$TERM_FLAG, p =. If we were to use caret with cross validation to find the optimal tree, how is it running? Basically, is the algorithm splitting the dataset into k folds, then calling the Rpart function, and for each call of the Rpart function doing the same thing described in point 1 above? In other words, is it using cross-validation within cross-validation, whereas Rpart is just using cross-validation once?īelow is some code, even though I'm asking more about how the algorithm functions, maybe it will be useful: library(rpart)ĭata.class <- data.termlifeĭata.class$TERM_FLAG <- as.factor(data.class$TERM_FLAG) Then it calculates the average error across all of the folds to get the 'xerror' output we see in CP$table As the tree is being built, the algorithm calculates the complexity parameter at each splitī) The algorithm then splits the data into k folds, and for each CP, basically just performs cross-validation using these folds.
#CARET RPART FULL#
How are these cross-validation errors calculated? In reading Rpart's vignette, it seems like RPart does the following:Ī) Fits the full tree based on the user-specified parameters. When pruning a tree, we would want to select the CP with the lowest cross-validation error. When using Rpart to fit a decision tree, calling dt$cptable displays a table of complexity parameters and their associated cross-validation errors. I have a few questions about the difference between Rpart and Caret (using Rpart):
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